Box 2. Labelling techniques for the detection of nucleic acids in living cells
DNA labelling
A tandemly repeated array (256 copies) of the lac operator (lacO) sequence is inserted into a chromosome. A fluorescent protein (XFP) is then artificially tethered to this specific DNA sequence by fusion to the DNA-binding lac-repressor protein (lacI), which binds these repeats and thereby allows for the detection of the integration locus in living cells (see figure, panel a).
RNA labelling
RNA molecules are detected using a fusion protein that comprises green fluorescent protein (GFP) and the MS2 bacteriophage coat protein, which has an extremely high affinity for a short RNA-recognition motif that is derived from the phage genome. Single mRNA molecules that contain as few as 24 MS2 RNA repeats can be detected (see figure, panel b).